Ezgi Özkurt

Dr. Ezgi Özkurt
PhD
Quadram Institute Biosciences
Norwich Research Park
Norwich NR4 7UQ

Research Interest

  • Microbiomes
  • Metagenomics
  • Population genetics, comparative genomics
  • Computational biology
Education
Max Planck Institute for Evolutionary Biology & Kiel University
2016-2020
PhD in Evolutionary Biology

Advisor: Prof. Eva H. Stukenbrock

Thesis: Domestication-driven metaorganism evolution of wheat

Middle East Technical University, Ankara, TURKEY
2014-2015
MSc in Biology

Advisor: Dr. Mehmet Somel

Thesis: Evolution of bladder cancer investigated using exome sequencing

Middle East Technical University, Ankara, TURKEY
2009-2014
BS in Molecular Biology and Genetics

Thesis: Effect of different methods in water quality assesment

Experience
Quadram Institute Biosciences
November 2019 - present
PostDoc

Advisor: Dr. Falk Hildebrand

Project: Human microbiomes with a focus on vertical transmission & gene networks

For further  information: https://www.falk.science

 

Max Planck Institute for Evolutionary Biology
July-September 2015
Erasmus Trainee

Supervisor: Dr. Arne Nolte

Project: Gene expression in Cottus fish in response to water temperature

Middle East Technical University
2013-2015
Researcher

Advisor: Dr. Mehmet Somel

  • Determining the origin of synchronous multifocal bladder cancer by next-generation sequencing (Published, Master Thesis)
  • Mechanisms of Testes Expression Divergence in Human and Chimpanzee (Available in BioRxiv)
Umeå University, Molecular Infection Medicine Sweden(MIMS), Umeå, SWEDEN
July– October 2013
Erasmus Trainee

Supervisor: Dr. Ake Forsberg

Project: Gene silencing and Gene Tagging in Yersinia Pseudotuberculosis species to understand the mechanism of Type3 secretion system

Publications
  1. M. Amine Hassani, Ezgi Özkurt, Sören Franzenburg, Eva H. Stukenbrock. Ecological Assembly Processes of the Bacterial and Fungal Microbiota of Wild and Domesticated Wheat Species, 2020, Phytobiomes
  2. Ezgi Özkurt, M. Amine Hassani, Uğur Sesiz, Tal Dagan, Hakan Özkan, Eva H. Stukenbrock. Seed-Derived Microbial Colonization of Wild Emmer and Domesticated Bread Wheat (Triticum dicoccoides and T. aestivum) Seedlings Shows Pronounced Differences in Overall Diversity and Composition, 2020, mBio
  3. M. Amine Hassani, Ezgi Özkurt, Heike Seybold, Eva H. Stukenbrock. Interactions and Coadaptation in Plant Metaorganisms, 2019, Annual Review of Phytopathology 
  4. Ezgi Özkurt*, Omer Açar*,  Gulfem Demir, Hilal Saraç, Can Alkan, Tarık Esen,  Mehmet Somel*, Nathan A. Lack*.Determining the Origin of Synchronous Multifocal Bladder Cancer by Next-Generation Sequencing, 2015, BMC Cancer, doi:  10.1186/s12885-015-1859-8 *Equal contributions 
  5. Ekin Saglican, Ezgi Özkurt, Haiyang Hu, Babur Erdem, Philipp Khaitovich, Mehmet Somel. Heterochrony Explains Convergent Testis Evolution in Primates.  Accessible on http://biorxiv.org/content/early/2014/10/21/010553
Conferences
  1. ESEB2019, August 19-24, Turku, Finland, Oral Presentation: Higher stochasticity of microbiota composition in seedlings of domesticated wheat compared to wild wheat
  2. SMBE2019, July 21-25, Machester, UK, Poster Presentation: Higher stochasticity of microbiota composition in seedlings of domesticated wheat compared to wild wheat
  3. EEBST2018, Ecology and Evolutionary Biology Symposium, July 18-20, Izmir, Turkey, Oral Presentation: Domestication-driven Metaorganism Evolution of Wheat
  4. EMBO Plant Microbiota Workshop,  26 March - 7 April 2017, Cologne, Max Planck Institute for Plant Breeding 
  5. Wild Plant Pathosystems, August 29-31, 2016, Helsinki, Poster Presentation: Genome Evolution of the Fungal Grass Pathogen Zymoseptoria pseudotritici 
  6. 17th Next Generation Plant Biotechnology Symposium, Rehovot, Israel, April 11-13, 2016
  7. Quantitative Evolutionary Biology Workshop 2014, Şirince Ali Nesin Mathematic Village, Poster Presentation: Exome Sequencing on Evolutionary Relationship of Multifocal Bladder Tumours
References

Dr. Eva H. Stukenbrock, Kiel University & Max Planck Institute for Evolutionary Biology, Germany Email: stukenbrock@evolbio.mpg.de  Phone: +49 431880 6368 (Kiel) & + 49 4522 763-236 (MPI)

Dr. Mehmet Somel, Middle East Technical University, Turkey Email: msomel@metu.edu.tr   Phone: + 90 312 210 6460

Programming Skills
R
Bash
Language Skills
Turkish
English
French
German
Learning
Popular Science
Science Writing
Writing in the science supplement of the Turkish newspaper, Bilimsol http://haber.sol.org.tr/kategori/bilim
Book Chapter Translation
Ezgi Özkurt & Ezgi Altınışık, A Primer of Human Genetics-Chapter 3 (Human Evolution, Greg Gibson)